3WJG Transport Protein date Oct 08, 2013
title Crystal Structure Of Mutant Nitrobindin M75lh76lq96cm148w (Nb10) From Arabidopsis Thaliana
authors E.Mizohata, K.Fukumoto, A.Onoda, M.Bocola, M.Arlt, T.Inoue, U.Schw T.Hayashi
compound source
Molecule: Upf0678 Fatty Acid-Binding Protein-Like Protein A
Chain: A
Synonym: Nitrobindin
Engineered: Yes
Mutation: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress, Thale-Cress
Organism_taxid: 3702
Gene: At1g79260, At1g79260.1, Yup8h12r.14
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21star(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet42b(+)
symmetry Space Group: P 21 21 2
R_factor 0.158 R_Free 0.188
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.940 79.410 36.477 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.10 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (3wjg.pdb1.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 3WJG
  • CSU: Contacts of Structural Units for 3WJG
  • Structure Factors (1278 Kb)
  • Retrieve 3WJG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WJG from S2C, [Save to disk]
  • Re-refined 3wjg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3WJG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3WJG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3WJG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wjg] [3wjg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3WJG
  • Community annotation for 3WJG at PDBWiki (http://pdbwiki.org)

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