3WMM Photosynthesis date Nov 22, 2013
title Crystal Structure Of The Lh1-Rc Complex From Thermochromatiu In C2 Form
authors S.Niwa, K.Takeda, Z.Y.Wang-Otomo, K.Miki
compound source
Molecule: Photosynthetic Reaction Center C Subunit
Chain: C
 Organism_scientific: Thermochromatium Tepidum
Organism_taxid: 1050

Molecule: Photosynthetic Reaction Center L Subunit
Chain: L
Organism_scientific: Thermochromatium Tepidum
Organism_taxid: 1050

Molecule: Photosynthetic Reaction Center M Subunit
Chain: M
Organism_scientific: Thermochromatium Tepidum
Organism_taxid: 1050

Molecule: Photosynthetic Reaction Center H Subunit
Chain: H
Organism_scientific: Thermochromatium Tepidum
Organism_taxid: 1050

Molecule: Lh1 Alpha Polypeptide
Chain: A, D, F, I, K, O, Q, S, U, W, Y, 1, 3, 5, 7, 9
Organism_scientific: Thermochromatium Tepidum
Organism_taxid: 1050

Molecule: Lh1 Beta Polypeptide
Chain: B, E, G, J, N, P, R, T, V, X, Z, 2, 4, 6, 8, 0
Organism_scientific: Thermochromatium Tepidum
Organism_taxid: 1050
symmetry Space Group: C 1 2 1
R_factor 0.314 R_Free 0.337
crystal
cell
length a length b length c angle alpha angle beta angle gamma
227.341 148.238 161.792 90.00 117.59 90.00
method X-Ray Diffractionresolution 3.01 Å
ligand BCL, BPH, CA, CRT, FE, HEM, MQ8, PEF, PGW, PO4, UQ8 enzyme
Gene
Ontology
ChainFunctionProcessComponent
C


H
  • electron transporter, transf...


    • L


    M


    S, K, 7, Y, 1, W, D, I, U, F, Q, A, O, 3, 9, 5
  • electron transporter, transf...


    • T, N, E, 2, Z, J, B, G, V, 0, 6, X, P, 8, 4, R
  • electron transporter, transf...


    • Primary referenceStructure of the LH1-RC complex from Thermochromatium tepidum at 3.0 A, Niwa S, Yu LJ, Takeda K, Hirano Y, Kawakami T, Wang-Otomo ZY, Miki K, Nature. 2014 Mar 26. doi: 10.1038/nature13197. PMID:24670637
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1121 Kb) [Save to disk]
  • Biological Unit Coordinates (3wmm.pdb1.gz) 1075 Kb
  • LPC: Ligand-Protein Contacts for 3WMM
  • CSU: Contacts of Structural Units for 3WMM
  • Structure Factors (759 Kb)
  • Retrieve 3WMM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WMM from S2C, [Save to disk]
  • Re-refined 3wmm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3WMM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3WMM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3WMM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wmm_H] [3wmm_8] [3wmm_I] [3wmm_7] [3wmm_S] [3wmm_F] [3wmm_L] [3wmm_R] [3wmm_A] [3wmm] [3wmm_V] [3wmm_N] [3wmm_Q] [3wmm_M] [3wmm_D] [3wmm_5] [3wmm_U] [3wmm_P] [3wmm_W] [3wmm_1] [3wmm_T] [3wmm_J] [3wmm_Y] [3wmm_3] [3wmm_6] [3wmm_Z] [3wmm_B] [3wmm_O] [3wmm_0] [3wmm_K] [3wmm_G] [3wmm_C] [3wmm_E] [3wmm_4] [3wmm_9] [3wmm_2] [3wmm_X]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3WMM
  • Community annotation for 3WMM at PDBWiki (http://pdbwiki.org)

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