3WVM Lipid Binding Protein date May 25, 2014
title The 0.88 Angstrom X-Ray Structure Of The Human Heart Fatty A Binding Protein Complexed With Stearic Acid
authors S.Sugiyama, S.Matsuoka, E.Mizohata, D.Matsuoka, H.Ishida, M.Hiros K.Kakinouchi, T.Hara, H.Matsumura, S.Murakami, T.Inoue, M.Murata
compound source
Molecule: Fatty Acid-Binding Protein, Heart
Chain: A
Synonym: Fatty Acid-Binding Protein 3, Heart-Type Fatty Aci Protein, H-Fabp, Mammary-Derived Growth Inhibitor, Mdgi, Mu Acid-Binding Protein, M-Fabp;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fabp3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
symmetry Space Group: P 21 21 21
R_factor 0.108 R_Free 0.113
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.557 69.418 33.812 90.00 90.00 90.00
method X-Ray Diffractionresolution 0.88 Å
ligand P6G, STE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • long-chain fatty acid bindin...


    • Primary referenceWater-mediated recognition of simple alkyl chains by heart-type Fatty-Acid-binding protein., Matsuoka S, Sugiyama S, Matsuoka D, Hirose M, Lethu S, Ano H, Hara T, Ichihara O, Kimura SR, Murakami S, Ishida H, Mizohata E, Inoue T, Murata M, Angew Chem Int Ed Engl. 2015 Jan 26;54(5):1508-11. doi: 10.1002/anie.201409830., Epub 2014 Dec 9. PMID:25491543
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (3wvm.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 3WVM
  • CSU: Contacts of Structural Units for 3WVM
  • Structure Factors (1045 Kb)
  • Retrieve 3WVM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WVM from S2C, [Save to disk]
  • Re-refined 3wvm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3WVM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3WVM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3WVM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wvm_A] [3wvm]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3WVM
  • Community annotation for 3WVM at PDBWiki (http://pdbwiki.org)

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