3WXU Hydrolase date Aug 08, 2014
title Crystal Structure Of Hen Egg-White Lysozyme
authors M.Sugahara, E.Nango, M.Suzuki
compound source
Molecule: Lysozyme C
Chain: A
Synonym: 1,4-Beta-N-Acetylmuramidase C, Allergen Gal D Iv
Ec: 3.2.1.17
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
symmetry Space Group: P 43 21 2
R_factor 0.185 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.000 79.000 38.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CL, NA enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceGrease matrix as a versatile carrier of proteins for serial crystallography., Sugahara M, Mizohata E, Nango E, Suzuki M, Tanaka T, Masuda T, Tanaka R, Shimamura T, Tanaka Y, Suno C, Ihara K, Pan D, Kakinouchi K, Sugiyama S, Murata M, Inoue T, Tono K, Song C, Park J, Kameshima T, Hatsui T, Joti Y, Yabashi M, Iwata S, Nat Methods. 2014 Nov 10. doi: 10.1038/nmeth.3172. PMID:25384243
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (3wxu.pdb1.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 3WXU
  • CSU: Contacts of Structural Units for 3WXU
  • Structure Factors (158 Kb)
  • Retrieve 3WXU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WXU from S2C, [Save to disk]
  • Re-refined 3wxu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3WXU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3WXU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3WXU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wxu_A] [3wxu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3WXU: [LYZ1 ] by SMART
  • Other resources with information on 3WXU
  • Community annotation for 3WXU at PDBWiki (http://pdbwiki.org)

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