3ZM4	Transferase	date	Feb 05, 2013
title	Crystal Structure Of Mek1 In Complex With Fragment 1
authors	K.Amaning, M.Lowinsky, F.Vallee, V.Steier, C.Marcireau, A.Ugolini C.Delorme, G.Mccort, C.Andouche, S.Vougier, S.Llopart, N.Halland
compound		source
Molecule: Dual Specificity Mitogen-Activated Protein Kinase Chain: A Fragment: Residues 37-383 Synonym: Map Kinase Kinase 1, Mapkk 1, Mkk1, Erk Activator Mapkerk Kinase 1, Mek 1; Ec: 2.7.12.2 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf21
symmetry	Space Group: P 61 2 2	R_factor 0.205 R_Free 0.241
crystal cell	length a length b length c angle alpha angle beta angle gamma 77.805 77.805 222.926 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.37 Å
ligand	22T	enzyme	Transferase E.C.2.7.12.2 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	The use of virtual screening and differential scanning fluorimetry for the rapid identification of fragments active against MEK1., Amaning K, Lowinski M, Vallee F, Steier V, Marcireau C, Ugolini A, Delorme C, Foucalt F, McCort G, Derimay N, Andouche C, Vougier S, Llopart S, Halland N, Rak A, Bioorg Med Chem Lett. 2013 Jun 15;23(12):3620-6. doi: 10.1016/j.bmcl.2013.04.003., Epub 2013 Apr 10. PMID:23648182

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk] Biological Unit Coordinates (3zm4.pdb1.gz) 53 Kb LPC: Ligand-Protein Contacts for 3ZM4 CSU: Contacts of Structural Units for 3ZM4 Structure Factors (320 Kb) Retrieve 3ZM4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3ZM4 from S2C, [Save to disk] Re-refined 3zm4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ZM4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3ZM4

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3ZM4, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3zm4] [3zm4_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3ZM4: [S_TKc ] by SMART

Other resources with information on 3ZM4

Community annotation for 3ZM4 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---