3ZOT Hydrolase date Feb 24, 2013
title Structure Of E.Coli Rhomboid Protease Glpg In Complex With M L29 (Data Set 2)
authors K.R.Vinothkumar, O.A.Pierrat, J.M.Large, M.Freeman
compound source
Molecule: Rhomboid Protease Glpg
Chain: A
Fragment: Core Tm Domain, Residues 92-271
Synonym: Intramembrane Serine Protease
Ec: 3.4.21.105
Engineered: Yes
Other_details: The Beta Lactam Ring Is Opened By The Nucleo Attack Of S201 On C2-O1 To Form A Covalent Bond
Organism_scientific: Escherichia Coli
Organism_taxid: 469008
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: C41
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet
symmetry Space Group: H 3 2
R_factor 0.198 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.200 110.200 128.900 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand BNG, CL, L6C enzyme Hydrolase E.C.3.4.21.105 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of Rhomboid Protease in Complex with beta-Lactam Inhibitors Defines the S2' Cavity., Vinothkumar KR, Pierrat OA, Large JM, Freeman M, Structure. 2013 May 7. pii: S0969-2126(13)00117-2. doi:, 10.1016/j.str.2013.03.013. PMID:23665170
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (3zot.pdb1.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 3ZOT
  • CSU: Contacts of Structural Units for 3ZOT
  • Structure Factors (181 Kb)
  • Retrieve 3ZOT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZOT from S2C, [Save to disk]
  • Re-refined 3zot structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZOT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZOT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZOT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zot] [3zot_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3ZOT
  • Community annotation for 3ZOT at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science