407D Dna date Jun 24, 1998
title Structural Basis For Recognition Of A-T And T-A Base Pairs I Minor Groove Of B-Dna
authors D.C.Rees
compound source
Molecule: Dna (5'-D(Cpcpapgptpapcptpgpg)-3')
Chain: A, B
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: C 1 2 1
R_factor 0.210 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.440 30.510 42.760 90.00 120.47 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand HP1, TRS enzyme
Primary referenceA structural basis for recognition of A.T and T.A base pairs in the minor groove of B-DNA., Kielkopf CL, White S, Szewczyk JW, Turner JM, Baird EE, Dervan PB, Rees DC, Science 1998 Oct 2;282(5386):111-5. PMID:9756473
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (407d.pdb1.gz) 12 Kb
  • LPC: Ligand-Protein Contacts for 407D
  • CSU: Contacts of Structural Units for 407D
  • Likely Quarternary Molecular Structure file(s) for 407D
  • Retrieve 407D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 407D from S2C, [Save to disk]
    • View 407D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 407D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 407D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [407d_A] [407d] [407d_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 407D
  • Community annotation for 407D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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