411D Dna date Jun 30, 1998
title Duplex [5'-D(Gcgta+Tacgc)]2 With Incorporated 2'-O-Methoxyet Ribonucleoside
authors V.Tereshko, S.Portmann, E.C.Tay, P.Martin, F.Natt, K.H.Altmann, M.
compound source
Molecule: Dna (5'-D(Gpcpgptpap(T39)Papcpgpc)-3')
Chain: A, B
Engineered: Yes
symmetry Space Group: P 21 21 21
R_factor 0.168 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
24.930 44.590 45.380 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.93 Å
ligand T39 enzyme
Primary referenceCorrelating structure and stability of DNA duplexes with incorporated 2'-O-modified RNA analogues., Tereshko V, Portmann S, Tay EC, Martin P, Natt F, Altmann KH, Egli M, Biochemistry 1998 Jul 28;37(30):10626-34. PMID:9692952
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk]
  • Biological Unit Coordinates (411d.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 411D
  • CSU: Contacts of Structural Units for 411D
  • Likely Quarternary Molecular Structure file(s) for 411D
  • Retrieve 411D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 411D from S2C, [Save to disk]
    • View 411D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 411D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 411D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [411d_A] [411d] [411d_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 411D
  • Community annotation for 411D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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