484D Rna Binding Protein Rna date Aug 02, 1999
title Solution Structure Of Hiv-1 Rev Peptide-Rna Aptamer Complex
authors X.Ye, A.A.Gorin, R.Frederick, W.Hu, A.Majumdar, W.Xu, G.Mclendon, A.Ellington, D.J.Patel
compound source
Molecule: Rna Aptamer
Chain: B
Engineered: Yes
 Synthetic: Yes

Molecule: Basic Rev Peptide
Chain: A
Fragment: Residues 34-50
Engineered: Yes
Synthetic: Yes
Other_details: Sequence From Rev Protein Of Human Immunodef Virus Type 1
methodSolution NMR
Primary referenceRNA architecture dictates the conformations of a bound peptide., Ye X, Gorin A, Frederick R, Hu W, Majumdar A, Xu W, McLendon G, Ellington A, Patel DJ, Chem Biol 1999 Sep;6(9):657-69. PMID:10467126
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (438 Kb) [Save to disk]
  • Biological Unit Coordinates (484d.pdb1.gz) 20 Kb
  • CSU: Contacts of Structural Units for 484D
  • Retrieve 484D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 484D from S2C, [Save to disk]
    • View 484D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 484D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 484D, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d484da_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [484d_B] [484d_A] [484d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 484D
  • Community annotation for 484D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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