4FGF Growth Factor date Feb 26, 1993
title Refinement Of The Structure Of Human Basic Fibroblast Growth 1.6 Angstroms Resolution And Analysis Of Presumed Heparin B Sites By Selenate Substitution
authors A.E.Eriksson, B.W.Matthews
compound source
Molecule: Basic Fibroblast Growth Factor
Chain: A
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
30.900 33.400 35.900 59.50 72.00 75.60
method X-Ray Diffractionresolution 1.60 Å
ligand BME, SO4 enzyme
note 4FGF supersedes 3FGF
related structures by homologous chain: 1BFG, 2FGF
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRefinement of the structure of human basic fibroblast growth factor at 1.6 A resolution and analysis of presumed heparin binding sites by selenate substitution., Eriksson AE, Cousens LS, Matthews BW, Protein Sci 1993 Aug;2(8):1274-84. PMID:7691311
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (4fgf.pdb1.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 4FGF
  • CSU: Contacts of Structural Units for 4FGF
  • Likely Quarternary Molecular Structure file(s) for 4FGF
  • Structure Factors (100 Kb)
  • Retrieve 4FGF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FGF from S2C, [Save to disk]
  • Re-refined 4fgf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4FGF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4FGF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FGF, from MSDmotif at EBI
  • Genome occurence of 4FGF's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d4fgf__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fgf_A] [4fgf]
  • SWISS-PROT database: [P09038]
  • Belongs to the fibroblast growth factor 2 (fgf2) family according to TCDB.
  • Domain organization of [FGF2_HUMAN] by SWISSPFAM
  • Domain found in 4FGF: [FGF ] by SMART
    • Other resources with information on 4FGF
  • Community annotation for 4FGF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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