4PGM	Isomerase	date	Apr 25, 1997
title	Saccharomyces Cerevisiae Phosphoglycerate Mutase
authors	D.J.Rigden, D.Alexeev, S.E.V.Phillips, L.A.Fothergill-Gilmore
compound		source
Molecule: Phosphoglycerate Mutase 1 Chain: A, B, C, D Ec: 5.4.2.1 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Strain: S150 Cell_line: 293 Cellular_location: Cytoplasm Gene: Gpm Expression_system: Saccharomyces Cerevisiae Expression_system_common: Baker'S Yeast Expression_system_taxid: 4932 Expression_system_strain: S150-Gpm\:\:His3 Expression_system_vector_type: Phagemid Expression_system_vector: Pvt-Gpm Expression_system_gene: Gpm
symmetry	Space Group: P 1 21 1	R_factor 0.192 R_Free 0.286
crystal cell	length a length b length c angle alpha angle beta angle gamma 81.467 84.555 88.884 90.00 111.72 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand		enzyme	Isomerase E.C.5.4.2.1 BRENDA
related structures	by homologous chain: 1BQ4, 5PGM
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	The 2.3 A X-ray crystal structure of S. cerevisiae phosphoglycerate mutase., Rigden DJ, Alexeev D, Phillips SE, Fothergill-Gilmore LA, J Mol Biol. 1998 Feb 20;276(2):449-59. PMID:9512715

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk] Biological Unit Coordinates (4pgm.pdb1.gz) 164 Kb CSU: Contacts of Structural Units for 4PGM Likely Quarternary Molecular Structure file(s) for 4PGM Structure Factors (859 Kb) Retrieve 4PGM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4PGM from S2C, [Save to disk] Re-refined 4pgm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4PGM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4PGM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4PGM, from MSDmotif at EBI Genome occurence of 4PGM's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d4pgma_, region A [Jmol] [rasmolscript] [script source]     - Domain d4pgmb_, region B [Jmol] [rasmolscript] [script source]     - Domain d4pgmc_, region C [Jmol] [rasmolscript] [script source]     - Domain d4pgmd_, region D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4pgm_C] [4pgm] [4pgm_B] [4pgm_A] [4pgm_D] SWISS-PROT database: [P00950] Domain organization of [PMG1_YEAST] by SWISSPFAM Domain found in 4PGM: [PGAM ] by SMART

Other resources with information on 4PGM

Community annotation for 4PGM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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