4A5N Transcription date Oct 26, 2011
title Redoxregulator Hypr In Its Reduced Form
authors G.J.Palm, P.Waack, R.J.Read, W.Hinrichs
compound source
Molecule: Uncharacterized Hth-Type Transcriptional Regulato
Chain: A, B, C, D
Synonym: Redox Regulator Hypr
Engineered: Yes
Mutation: Yes
Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Strain: Trpc2
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdghyprc14s
symmetry Space Group: P 1 21 1
R_factor 0.183 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.930 68.030 60.420 90.00 97.45 90.00
method X-Ray Diffractionresolution 1.81 Å
ligand BME, EDO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural insights into the redox-switch mechanism of the MarR/DUF24-type regulator HypR., Palm GJ, Khanh Chi B, Waack P, Gronau K, Becher D, Albrecht D, Hinrichs W, Read RJ, Antelmann H, Nucleic Acids Res. 2012 May 1;40(9):4178-92. Epub 2012 Jan 11. PMID:22238377
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (154 Kb) [Save to disk]
  • Biological Unit Coordinates (4a5n.pdb1.gz) 77 Kb
  • Biological Unit Coordinates (4a5n.pdb2.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 4A5N
  • CSU: Contacts of Structural Units for 4A5N
  • Structure Factors (1967 Kb)
  • Retrieve 4A5N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4A5N from S2C, [Save to disk]
  • Re-refined 4a5n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4A5N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4A5N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4A5N, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4a5n_C] [4a5n_B] [4a5n_A] [4a5n_D] [4a5n]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4A5N
  • Community annotation for 4A5N at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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