4A6F	Signaling Protein	date	Nov 02, 2011
title	Crystal Structure Of Slm1-Ph Domain In Complex With Phosphos
authors	K.Anand, K.Maeda, A.C.Gavin
compound		source
Molecule: Phosphatidylinositol 4,5-Bisphosphate-Binding Pro Chain: A Fragment: Slm1-Ph Domain, Residues 469-583 Synonym: Synthetic Lethal With Mss4 Protein 1, Torc2 Effect Slm1; Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_vector: Pet100-Dtopo
Molecule: Phosphatidylinositol 4,5-Bisphosphate-Binding Pro Chain: B Fragment: Slm1-Ph Domain, Residues 469-583 Synonym: Synthetic Lethal With Mss4 Protein 1, Torc2 Effect Slm1; Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_vector: Pet100-Dtopo
symmetry	Space Group: P 2 21 21	R_factor 0.214 R_Free 0.242
crystal cell	length a length b length c angle alpha angle beta angle gamma 37.540 73.650 82.470 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.68 Å
ligand	PO4, SEP	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural Analyses of the Slm1-PH Domain Demonstrate Ligand Binding in the Non-Canonical Site., Anand K, Maeda K, Gavin AC, PLoS One. 2012;7(5):e36526. Epub 2012 May 4. PMID:22574179

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk] Biological Unit Coordinates (4a6f.pdb1.gz) 147 Kb LPC: Ligand-Protein Contacts for 4A6F CSU: Contacts of Structural Units for 4A6F Structure Factors (185 Kb) Retrieve 4A6F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4A6F from S2C, [Save to disk] Re-refined 4a6f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4A6F in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4A6F

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4A6F, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4a6f_B] [4a6f_A] [4a6f] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4A6F: [PH ] by SMART

Other resources with information on 4A6F

Community annotation for 4A6F at PDBWiki (http://pdbwiki.org)

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