4AFE	Transferase	date	Jan 19, 2012
title	Nek2 Bound To Hybrid Compound 21
authors	S.Yeoh, P.Innocenti, S.Hoelder, R.Bayliss
compound		source
Molecule: Serinethreonine-Protein Kinase Nek2 Chain: A Fragment: Catalytic Domain, Residues 1-271 Synonym: Hspk 21, Never In Mitosis A-Related Kinase 2, Nima Protein Kinase 2, Nima-Like Protein Kinase 1, Nek2; Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Codonplus Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet30
symmetry	Space Group: C 1 2 1	R_factor 0.217 R_Free 0.248
crystal cell	length a length b length c angle alpha angle beta angle gamma 101.039 56.724 74.279 90.00 127.10 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	EDO, GGY BindingDB	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Design of potent and selective hybrid inhibitors of the mitotic kinase nek2: structure-activity relationship, structural biology, and cellular activity., Innocenti P, Cheung KM, Solanki S, Mas-Droux C, Rowan F, Yeoh S, Boxall K, Westlake M, Pickard L, Hardy T, Baxter JE, Aherne GW, Bayliss R, Fry AM, Hoelder S, J Med Chem. 2012 Apr 12;55(7):3228-41. Epub 2012 Mar 23. PMID:22404346

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk] Biological Unit Coordinates (4afe.pdb1.gz) 44 Kb LPC: Ligand-Protein Contacts for 4AFE CSU: Contacts of Structural Units for 4AFE Structure Factors (530 Kb) Retrieve 4AFE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4AFE from S2C, [Save to disk] Re-refined 4afe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4AFE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4AFE

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4AFE, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4afe] [4afe_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4AFE: [S_TKc ] by SMART

Other resources with information on 4AFE

Community annotation for 4AFE at PDBWiki (http://pdbwiki.org)

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