4AG2 Hydrolase De Novo Protein date Jan 23, 2012
title Human Chymase - Fynomer Complex
authors D.Schlatter, S.Brack, D.W.Banner, S.Batey, J.Benz, J.Bertschinger C.Joseph, A.Rufer, A.Van Der Kloosters, M.Weber, D.Grabulovski,
compound source
Molecule: Chymase
Chain: A, B
Synonym: Alpha-Chymase, Mast Cell Protease I
Ec: 3.4.21.39
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Fynomer
Chain: C, D
Engineered: Yes

Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.17853 R_Free 0.21168
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.937 64.124 174.987 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand LMR, MES, NA enzyme Hydrolase E.C.3.4.21.39 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceGeneration, characterization and structural data of chymase binding proteins based on the human Fyn kinase SH3 domain., Schlatter D, Brack S, Banner DW, Batey S, Benz J, Bertschinger J, Huber W, Joseph C, Rufer A, van der Klooster A, Weber M, Grabulovski D, Hennig M, MAbs. 2012 Jul 1;4(4):497-508. Epub 2012 Jul 1. PMID:22653218
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (4ag2.pdb1.gz) 54 Kb
  • Biological Unit Coordinates (4ag2.pdb2.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 4AG2
  • CSU: Contacts of Structural Units for 4AG2
  • Structure Factors (1143 Kb)
  • Retrieve 4AG2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AG2 from S2C, [Save to disk]
  • Re-refined 4ag2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AG2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AG2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AG2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ag2] [4ag2_D] [4ag2_A] [4ag2_B] [4ag2_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4AG2: [SH3] [Tryp_SPc ] by SMART
  • Other resources with information on 4AG2
  • Community annotation for 4AG2 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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