4AN2 Transferase date Mar 14, 2012
title Crystal Structures Of Human Mek1 With Carboxamide-Based Allo Inhibitor Xl518 (Gdc-0973), Or Related Analogs.
authors K.D.Rice, N.Aay, N.K.Anand, C.M.Blazey, O.J.Bowles, J.Bussenius, S.Costanzo, J.K.Curtis, S.C.Defina, L.Dubenko, S.Engst, A.A.Josh A.R.Kennedy, A.I.Kim, E.S.Koltun, J.C.Lougheed, J.C.L.Manalo, J.F.Martini, J.M.Nuss, C.J.Peto, T.H.Tsang, P.Yu, S.Johnston
compound source
Molecule: Dual Specificity Mitogen-Activated Protein Kinase 1;
Chain: A
Fragment: Protein Kinase Domain, Residues 61-262,305-392
Synonym: Map Kinase Kinase 1, Mapkk 1, Mkk1, Erk Activator 1, Mapkerk Kinase 1, Mek 1;
Ec: 2.7.12.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 61
R_factor 0.21079 R_Free 0.29898
crystal
cell
length a length b length c angle alpha angle beta angle gamma
108.844 108.844 47.710 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand ACP, EUI, MG BindingDB enzyme Transferase E.C.2.7.12.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNovel Carboxamide-Based Allosteric MEK Inhibitors: Discovery and Optimization Efforts toward XL518 (GDC-0973)., Rice KD, Aay N, Anand NK, Blazey CM, Bowles OJ, Bussenius J, Costanzo S, Curtis JK, Defina SC, Dubenko L, Engst S, Joshi AA, Kennedy AR, Kim AI, Koltun ES, Lougheed JC, Manalo JC, Martini JF, Nuss JM, Peto CJ, Tsang TH, Yu P, Johnston S, ACS Med Chem Lett. 2012 Apr 9;3(5):416-21. doi: 10.1021/ml300049d. eCollection, 2012 May 10. PMID:24900486
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (4an2.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 4AN2
  • CSU: Contacts of Structural Units for 4AN2
  • Structure Factors (152 Kb)
  • Retrieve 4AN2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AN2 from S2C, [Save to disk]
  • Re-refined 4an2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AN2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AN2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AN2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4an2] [4an2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4AN2: [S_TKc ] by SMART
  • Other resources with information on 4AN2
  • Community annotation for 4AN2 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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