4AOV Oxidoreductase date Mar 30, 2012
title Dpidh-Nadp. The Complex Structures Of Isocitrate Dehydrogena Clostridium Thermocellum And Desulfotalea Psychrophila, Sup Active Site Locking Mechanism
authors H.K.S.Leiros, A.E.Fedoy, I.Leiros, I.H.Steen
compound source
Molecule: Isocitrate Dehydrogenase [Nadp]
Chain: A
Ec: 1.1.1.42
Engineered: Yes
Organism_scientific: Desulfotalea Psychrophila
Organism_taxid: 84980
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Eb106
symmetry Space Group: C 1 2 1
R_factor 0.175 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.640 98.910 71.890 90.00 103.94 90.00
method X-Ray Diffractionresolution 1.93 Å
ligand ICT, MG, NAP enzyme Oxidoreductase E.C.1.1.1.42 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe complex structures of isocitrate dehydrogenase from Clostridium thermocellum and Desulfotalea psychrophila suggest a new active site locking mechanism., Leiros HK, Fedoy AE, Leiros I, Steen IH, FEBS Open Bio. 2012 Jul 7;2:159-72. doi: 10.1016/j.fob.2012.06.003. Print 2012. PMID:23650595
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (4aov.pdb1.gz) 141 Kb
  • LPC: Ligand-Protein Contacts for 4AOV
  • CSU: Contacts of Structural Units for 4AOV
  • Structure Factors (425 Kb)
  • Retrieve 4AOV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AOV from S2C, [Save to disk]
  • Re-refined 4aov structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AOV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AOV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AOV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4aov_A] [4aov]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4AOV: [Iso_dh ] by SMART
  • Other resources with information on 4AOV
  • Community annotation for 4AOV at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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