4AOY Oxidoreductase date Mar 30, 2012
title Open Ctidh. The Complex Structures Of Isocitrate Dehydrogena Clostridium Thermocellum And Desulfotalea Psychrophila, Sup Active Site Locking Mechanism
authors H.K.S.Leiros, A.E.Fedoy, I.Leiros, I.H.Steen
compound source
Molecule: Isocitrate Dehydrogenase [Nadp]
Chain: A, B, C, D
Ec: 1.1.1.42
Organism_scientific: Clostridium Thermocellum
Organism_taxid: 1515
symmetry Space Group: P 1 21 1
R_factor 0.210 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.130 106.840 154.500 90.00 93.63 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand
enzyme Oxidoreductase E.C.1.1.1.42 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceThe complex structures of isocitrate dehydrogenase from Clostridium thermocellum and Desulfotalea psychrophila suggest a new active site locking mechanism., Leiros HK, Fedoy AE, Leiros I, Steen IH, FEBS Open Bio. 2012 Jul 7;2:159-72. doi: 10.1016/j.fob.2012.06.003. Print 2012. PMID:23650595
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (495 Kb) [Save to disk]
  • Biological Unit Coordinates (4aoy.pdb1.gz) 244 Kb
  • Biological Unit Coordinates (4aoy.pdb2.gz) 244 Kb
  • CSU: Contacts of Structural Units for 4AOY
  • Structure Factors (3954 Kb)
  • Retrieve 4AOY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AOY from S2C, [Save to disk]
  • Re-refined 4aoy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AOY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AOY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AOY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4aoy_B] [4aoy_D] [4aoy_C] [4aoy] [4aoy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4AOY: [Iso_dh ] by SMART
  • Other resources with information on 4AOY
  • Community annotation for 4AOY at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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