4APA Hydrolase date Mar 31, 2012
title Crystal Structure Of Mycobacterium Tuberculosis Fumarase (Rv S318a In Apo Form
authors M.Bellinzoni, A.Haouz, A.E.Mechaly, P.M.Alzari
compound source
Molecule: Fumarate Hydratase Class II
Chain: A, B, C, D
Synonym: Fumarase C
Ec: 4.2.1.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 83332
Strain: H37rv
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest17
symmetry Space Group: C 1 2 1
R_factor 0.165 R_Free 0.179
crystal
cell
length a length b length c angle alpha angle beta angle gamma
268.270 97.142 96.436 90.00 104.54 90.00
method X-Ray Diffractionresolution 2.04 Å
ligand
enzyme Lyase E.C.4.2.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceConformational changes upon ligand binding in the essential class II fumarase Rv1098c from Mycobacterium tuberculosis., Mechaly AE, Haouz A, Miras I, Barilone N, Weber P, Shepard W, Alzari PM, Bellinzoni M, FEBS Lett. 2012 Jun 4;586(11):1606-11. Epub 2012 May 3. PMID:22561013
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (541 Kb) [Save to disk]
  • Biological Unit Coordinates (4apa.pdb1.gz) 531 Kb
  • CSU: Contacts of Structural Units for 4APA
  • Structure Factors (6466 Kb)
  • Retrieve 4APA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4APA from S2C, [Save to disk]
  • Re-refined 4apa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4APA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4APA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4APA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4apa] [4apa_C] [4apa_B] [4apa_A] [4apa_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4APA
  • Community annotation for 4APA at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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