4AUX Transcription date May 22, 2012
title Tet Repressor Class D In Complex With 9-Nitrotetracycline
authors P.Orth, W.Saenger, W.Hinrichs
compound source
Molecule: Tetracycline Repressor Protein Class D
Chain: A
Fragment: Residues 2-208
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12
Variant: Delta H1 Delta Trp
Expression_system: Escherichia Coli
Expression_system_taxid: 83333
Expression_system_strain: K-12
Expression_system_variant: Delta H1 Delta Trp
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pwh904
symmetry Space Group: I 41 2 2
R_factor 0.209 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.100 69.100 182.930 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand CL, MG, XTC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (4aux.pdb1.gz) 142 Kb
  • LPC: Ligand-Protein Contacts for 4AUX
  • CSU: Contacts of Structural Units for 4AUX
  • Structure Factors (87 Kb)
  • Retrieve 4AUX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AUX from S2C, [Save to disk]
  • Re-refined 4aux structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AUX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AUX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AUX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4aux_A] [4aux]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4AUX
  • Community annotation for 4AUX at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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