4AV6 Hydrolase date May 23, 2012
title Crystal Structure Of Thermotoga Maritima Sodium Pumping Memb Integral Pyrophosphatase At 4 A In Complex With Phosphate A Magnesium
authors T.Kajander, J.Kellosalo, K.Kogan, K.Pokharel, A.Goldman
compound source
Molecule: K(+)-Stimulated Pyrophosphate-Energized Sodium Pu
Chain: A, B
Fragment: Residues 2-726
Synonym: Membrane-Bound Sodium-Translocating Pyrophosphatas Pyrophosphate-Energized Inorganic Pyrophosphatase, Na(+)-P Tm-Ppase;
Ec: 3.6.1.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Thermotoga Maritima
Organism_taxid: 2336
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
Expression_system_strain: Bj1991
symmetry Space Group: P 1 21 1
R_factor 0.2952 R_Free 0.3650
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.800 112.266 109.714 90.00 103.00 90.00
method X-Ray Diffractionresolution 4.00 Å
ligand K, MG, PO4 enzyme Hydrolase E.C.3.6.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe structure and catalytic cycle of a sodium-pumping pyrophosphatase., Kellosalo J, Kajander T, Kogan K, Pokharel K, Goldman A, Science. 2012 Jul 27;337(6093):473-6. PMID:22837527
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (418 Kb) [Save to disk]
  • Biological Unit Coordinates (4av6.pdb1.gz) 409 Kb
  • LPC: Ligand-Protein Contacts for 4AV6
  • CSU: Contacts of Structural Units for 4AV6
  • Structure Factors (81 Kb)
  • Retrieve 4AV6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AV6 from S2C, [Save to disk]
  • Re-refined 4av6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AV6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AV6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AV6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4av6_B] [4av6] [4av6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4AV6
  • Community annotation for 4AV6 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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