4AXJ Structural Protein date Jun 13, 2012
title Structure Of The Clostridium Difficile Eutm Protein
authors A.C.Pitts, L.R.Tuck, A.Faulds-Pain, R.J.Lewis, J.Marles-Wright
compound source
Molecule: Ethanolamine Carboxysome Structural Protein
Chain: A, B, C
Synonym: Eutm
Engineered: Yes
 Organism_scientific: Clostridium Difficile
Organism_taxid: 272563
Strain: 630
Expression_system: Escherichia Coli B
Expression_system_taxid: 37762
Expression_system_strain: B834
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet28b
symmetry Space Group: I 1 2 1
R_factor 0.165 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.368 46.380 76.400 90.00 91.56 90.00
method X-Ray Diffractionresolution 1.62 Å
ligand SO4 enzyme
Primary referenceStructural insight into the Clostridium difficile ethanolamine utilisation microcompartment., Pitts AC, Tuck LR, Faulds-Pain A, Lewis RJ, Marles-Wright J, PLoS One. 2012;7(10):e48360. doi: 10.1371/journal.pone.0048360. Epub 2012 Oct 29. PMID:23144756
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (4axj.pdb1.gz) 220 Kb
  • LPC: Ligand-Protein Contacts for 4AXJ
  • CSU: Contacts of Structural Units for 4AXJ
  • Structure Factors (1247 Kb)
  • Retrieve 4AXJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AXJ from S2C, [Save to disk]
  • Re-refined 4axj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4AXJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4AXJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AXJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4axj] [4axj_C] [4axj_B] [4axj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4AXJ: [BMC ] by SMART
    • Other resources with information on 4AXJ
  • Community annotation for 4AXJ at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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