4B61 In meso structure of alginate transporter, AlgE, from Pseudomoas aeruginosa, PAO1. Crystal form 3. date
authors Tan, J., Pye, V.E., Aragao, D., Caffrey, M.
compound source
symmetry
R_factor
R_Free 0.2436
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand 78M, 78N, ACT, CU, LDA, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA conformational landscape for alginate secretion across the outer membrane of Pseudomonas aeruginosa., Tan J, Rouse SL, Li D, Pye VE, Vogeley L, Brinth AR, El Arnaout T, Whitney JC, Howell PL, Sansom MS, Caffrey M, Acta Crystallogr D Biol Crystallogr. 2014 Aug 1;70(Pt 8):2054-68. doi:, 10.1107/S1399004714001850. Epub 2014 Jul 25. PMID:25084326
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (307 Kb) [Save to disk]
  • Biological Unit Coordinates (4b61.pdb1.gz) 148 Kb
  • Biological Unit Coordinates (4b61.pdb2.gz) 153 Kb
  • LPC: Ligand-Protein Contacts for 4B61
  • CSU: Contacts of Structural Units for 4B61
  • Structure Factors (1803 Kb)
  • Retrieve 4B61 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4B61 from S2C, [Save to disk]
  • Re-refined 4b61 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4B61 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4B61
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4B61, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4b61_A] [4b61] [4b61_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4B61
  • Community annotation for 4B61 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science