4B7B Cell Cycle date Aug 17, 2012
title Eg5-3
authors S.K.Talapatra, F.Kozielski
compound source
Molecule: Kinesin-Like Protein Kif11
Chain: A
Fragment: Motor Domain 1-368
Synonym: Eg5-3, Kinesin-Like Protein 1, Kinesin-Like Spindl Kinesin-Related Motor Protein Eg5, Thyroid Receptor-Interac 5, Tr-Interacting Protein 5, Trip-5;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pproex
symmetry Space Group: P 65
R_factor 0.179 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.500 81.500 114.921 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand ADP, CA, CD, CL, CO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Mitotic Kinesin Eg5 Overcomes Inhibition to the Phase I/II Clinical Candidate SB743921 by an Allosteric Resistance Mechanism., Talapatra SK, Anthony NG, Mackay SP, Kozielski F, J Med Chem. 2013 Jul 22. PMID:23875972
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (4b7b.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 4B7B
  • CSU: Contacts of Structural Units for 4B7B
  • Structure Factors (221 Kb)
  • Retrieve 4B7B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4B7B from S2C, [Save to disk]
  • Re-refined 4b7b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4B7B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4B7B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4B7B, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4b7b] [4b7b_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4B7B: [KISc ] by SMART
  • Other resources with information on 4B7B
  • Community annotation for 4B7B at PDBWiki (http://pdbwiki.org)

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