4B87 Hydrolase date Aug 24, 2012
title Crystal Structure Of Human Dna Cross-Link Repair 1a
authors C.K.Allerston, G.Berridge, E.P.Carpenter, G.Kochan, T.Krojer, P.M M.Vollmar, W.W.Yue, C.H.Arrowsmith, A.Edwards, C.Bountra, F.Von O.Gileadi
compound source
Molecule: Dna Cross-Link Repair 1a Protein
Chain: A
Fragment: Residues 676-1040
Synonym: Snm1 Homolog A, Hsnm1, Hsnm1a
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 61 2 2
R_factor 0.176 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.400 83.400 257.841 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.16 Å
ligand EDO, ZN enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (4b87.pdb1.gz) 115 Kb
  • LPC: Ligand-Protein Contacts for 4B87
  • CSU: Contacts of Structural Units for 4B87
  • Structure Factors (1033 Kb)
  • Retrieve 4B87 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4B87 from S2C, [Save to disk]
  • Re-refined 4b87 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4B87 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4B87
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4B87, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4b87_A] [4b87]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4B87: [Lactamase_B ] by SMART
    • Other resources with information on 4B87
  • Community annotation for 4B87 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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