4BAN	Hydrolase	date	Sep 14, 2012
title	Thrombin In Complex With Inhibitor
authors	Y.Xue, D.Musil
compound		source
Molecule: Thrombin Light Chain Chain: A Synonym: Coagulation Factor II Ec: 3.4.21.5		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Thrombin Heavy Chain Chain: B Synonym: Coagulation Factor II Ec: 3.4.21.5		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Hirudin Variant-2 Chain: D Fragment: Residues 53-64 Synonym: Hirudin-1, Hirudin-I, Lepirudin Other_details: Synthetic C-Terminal Peptide 53-64 (With Sul Tyr63)		Organism_scientific: Hirudo Medicinalis Organism_taxid: 6421
symmetry	Space Group: C 1 2 1	R_factor 0.167 R_Free 0.204
crystal cell	length a length b length c angle alpha angle beta angle gamma 69.410 71.510 72.160 90.00 100.34 90.00
method	X-Ray Diffraction	resolution	1.87 Å
ligand	M6S, NA, NAG, TYS	enzyme	Hydrolase E.C.3.4.21.5 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Identification of Structure-Kinetic and Structure-Thermodynamic Relationships for Thrombin Inhibitors., Winquist J, Geschwindner S, Xue Y, Gustavsson L, Musil D, Deinum J, Danielson UH, Biochemistry. 2013 Jan 4. PMID:23290007

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk] Biological Unit Coordinates (4ban.pdb1.gz) 55 Kb LPC: Ligand-Protein Contacts for 4BAN CSU: Contacts of Structural Units for 4BAN Structure Factors (348 Kb) Retrieve 4BAN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4BAN from S2C, [Save to disk] Re-refined 4ban structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4BAN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4BAN

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4BAN, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ban_A] [4ban_D] [4ban] [4ban_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4BAN: [Tryp_SPc ] by SMART

Other resources with information on 4BAN

Community annotation for 4BAN at PDBWiki (http://pdbwiki.org)

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