4BAQ	Hydrolase	date	Sep 14, 2012
title	Thrombin In Complex With Inhibitor
authors	Y.Xue, D.Musil
compound		source
Molecule: Thrombin Light Chain Chain: A Synonym: Coagulation Factor II Ec: 3.4.21.5		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Thrombin Heavy Chain Chain: B Synonym: Coagulation Factor II Ec: 3.4.21.5		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Hirudin Variant-1 Chain: D Fragment: Residues 53-64 Synonym: Hirudin-1, Hirudin-I, Lepirudin Engineered: Yes Other_details: Synthetic C-Terminal Peptide 53-64 (With Sul Tyr63)		Synthetic: Yes Organism_scientific: Hirudo Medicinalis Organism_taxid: 6421
symmetry	Space Group: C 1 2 1	R_factor 0.187 R_Free 0.221
crystal cell	length a length b length c angle alpha angle beta angle gamma 69.410 71.510 72.160 90.00 100.34 90.00
method	X-Ray Diffraction	resolution	1.89 Å
ligand	M4Z, NA, NAG, TYS	enzyme	Hydrolase E.C.3.4.21.5 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Identification of Structure-Kinetic and Structure-Thermodynamic Relationships for Thrombin Inhibitors., Winquist J, Geschwindner S, Xue Y, Gustavsson L, Musil D, Deinum J, Danielson UH, Biochemistry. 2013 Jan 4. PMID:23290007

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk] Biological Unit Coordinates (4baq.pdb1.gz) 52 Kb LPC: Ligand-Protein Contacts for 4BAQ CSU: Contacts of Structural Units for 4BAQ Structure Factors (332 Kb) Retrieve 4BAQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4BAQ from S2C, [Save to disk] Re-refined 4baq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 4BAQ

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4BAQ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4baq] [4baq_A] [4baq_D] [4baq_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4BAQ: [Tryp_SPc ] by SMART

Other resources with information on 4BAQ

Community annotation for 4BAQ at PDBWiki (http://pdbwiki.org)

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