4BEM Hydrolase date Mar 11, 2013
title Crystal Structure Of The F-Type Atp Synthase C-Ring From Acetobacterium Woodii.
authors D.Matthies, T.Meier, O.Yildiz
compound source
Molecule: F1fo Atpase C2 Subunit
Chain: A, B, C, D, E, F, G, H, I
Synonym: F1fo Atpase C3 Subunit
 Organism_scientific: Acetobacterium Woodii
Organism_taxid: 931626
Strain: Dsm 1030

Molecule: F1fo Atpase C1 Subunit
Chain: J
Organism_scientific: Acetobacterium Woodii
Organism_taxid: 931626
Strain: Dsm 1030
symmetry Space Group: P 43 21 2
R_factor 0.182 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.170 121.170 150.570 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand ACT, FME, HTG, MN, NA, P6G, TAM enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, E, B, H, C, D, I, G


Primary referenceHigh-resolution structure and mechanism of an F/V-hybrid rotor ring in a Na(+)-coupled ATP synthase., Matthies D, Zhou W, Klyszejko AL, Anselmi C, Yildiz O, Brandt K, Muller V, Faraldo-Gomez JD, Meier T, Nat Commun. 2014 Nov 10;5:5286. doi: 10.1038/ncomms6286. PMID:25381992
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (302 Kb) [Save to disk]
  • Biological Unit Coordinates (4bem.pdb1.gz) 293 Kb
  • LPC: Ligand-Protein Contacts for 4BEM
  • CSU: Contacts of Structural Units for 4BEM
  • Structure Factors (501 Kb)
  • Retrieve 4BEM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BEM from S2C, [Save to disk]
  • Re-refined 4bem structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4BEM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4BEM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BEM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bem_I] [4bem_J] [4bem_C] [4bem_G] [4bem_H] [4bem_B] [4bem_F] [4bem_D] [4bem] [4bem_E] [4bem_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4BEM
  • Community annotation for 4BEM at PDBWiki (http://pdbwiki.org)

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