4BGG Transferase date Mar 26, 2013
title Crystal Structure Of The Acvr1 Kinase In Complex With Ldn-21
authors C.Sanvitale, P.Canning, C.Cooper, Y.Wang, A.H.Mohedas, S.Choi, P.B G.D.Cuny, R.Nowak, D.Coutandin, M.Vollmar, F.Von Delft, C.H.Arro A.M.Edwards, C.Bountra, A.Bullock, Structural Genomics Consort
compound source
Molecule: Activin Receptor Type-1
Chain: A, B, C, D
Fragment: Kinase Domain, Residues 201-499
Synonym: Activin Receptor Type I, Actr-I, Activin Receptor- Kinase 2, Alk-2, Serinethreonine-Protein Kinase Receptor R Tgf-B Superfamily Receptor Type I, Tsr-I;
Ec: 2.7.11.30
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfb-Lic-Bse
Other_details: Site-Directed Mutagenesis
symmetry Space Group: I 1 2 1
R_factor 0.215 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.380 99.850 187.438 90.00 92.93 90.00
method X-Ray Diffractionresolution 2.56 Å
ligand 844, EDO, FLC enzyme Transferase E.C.2.7.11.30 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure-activity relationship of 3,5-diaryl-2-aminopyridine ALK2 inhibitors reveals unaltered binding affinity for fibrodysplasia ossificans progressiva causing mutants., Mohedas AH, Wang Y, Sanvitale CE, Canning P, Choi S, Xing X, Bullock AN, Cuny GD, Yu PB, J Med Chem. 2014 Oct 9;57(19):7900-15. doi: 10.1021/jm501177w. Epub 2014 Sep 4. PMID:25101911
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (390 Kb) [Save to disk]
  • Biological Unit Coordinates (4bgg.pdb1.gz) 101 Kb
  • Biological Unit Coordinates (4bgg.pdb2.gz) 100 Kb
  • Biological Unit Coordinates (4bgg.pdb3.gz) 94 Kb
  • Biological Unit Coordinates (4bgg.pdb4.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 4BGG
  • CSU: Contacts of Structural Units for 4BGG
  • Structure Factors (1886 Kb)
  • Retrieve 4BGG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BGG from S2C, [Save to disk]
  • Re-refined 4bgg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BGG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BGG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BGG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bgg_A] [4bgg_B] [4bgg] [4bgg_D] [4bgg_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BGG: [STYKc ] by SMART
  • Other resources with information on 4BGG
  • Community annotation for 4BGG at PDBWiki (http://pdbwiki.org)

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