4BJC Transferase date Apr 18, 2013
title Crystal Structure Of Human Tankyrase 2 In Complex With Rucap
authors T.Haikarainen, M.Narwal, L.Lehtio
compound source
Molecule: Tankyrase-2
Chain: A
Fragment: C-Terminal Fragment, Residues 946-1162
Synonym: Tank2, Adp-Ribosyltransferase Diphtheria Toxin-Lik Artd6, Poly [Adp-Ribose] Polymerase 5b, Tnks-2, Trf1-Inter Ankyrin-Related Adp-Ribose Polymerase 2, Tankyrase II, Tankyrase-Like Protein, Tankyrase-Related Protein;
Ec: 2.4.2.30
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta 2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 41 21 2
R_factor 0.19458 R_Free 0.24718
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.300 65.300 122.910 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand RPB, SO4, ZN enzyme Transferase E.C.2.4.2.30 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEvaluation and Structural Basis for the Inhibition of Tankyrases by PARP Inhibitors., Haikarainen T, Narwal M, Joensuu P, Lehtio L, ACS Med Chem Lett. 2013 Nov 20;5(1):18-22. doi: 10.1021/ml400292s. eCollection, 2014 Jan 9. PMID:24900770
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (4bjc.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 4BJC
  • CSU: Contacts of Structural Units for 4BJC
  • Structure Factors (102 Kb)
  • Retrieve 4BJC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BJC from S2C, [Save to disk]
  • Re-refined 4bjc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BJC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BJC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BJC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bjc_A] [4bjc]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4BJC
  • Community annotation for 4BJC at PDBWiki (http://pdbwiki.org)

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