4BK0 Transcription date Apr 21, 2013
title Crystal Structure Of The Kix Domain Of Human Recql5 (Domain- Dimer)
authors S.A.Kassube, M.Jinek, J.Fang, S.Tsutakawa, E.Nogales
compound source
Molecule: Atp-Dependent Dna Helicase Q5
Chain: A, B
Fragment: Kix Domain, Residues 515-620
Synonym: Dna Helicase, Recq-Like Type 5, Recq5, Recq Protei Recql5;
Ec: 3.6.4.12
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: Ril
Expression_system_vector_type: Plasmid
Expression_system_vector: Pgex6p1
symmetry Space Group: P 21 21 21
R_factor 0.201 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.670 61.210 81.650 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand PEG enzyme Hydrolase E.C.3.6.4.12 BRENDA
Primary referenceStructural mimicry in transcription regulation of human RNA polymerase II by the DNA helicase RECQL5., Kassube SA, Jinek M, Fang J, Tsutakawa S, Nogales E, Nat Struct Mol Biol. 2013 Jun 9. doi: 10.1038/nsmb.2596. PMID:23748380
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (4bk0.pdb1.gz) 97 Kb
  • LPC: Ligand-Protein Contacts for 4BK0
  • CSU: Contacts of Structural Units for 4BK0
  • Structure Factors (144 Kb)
  • Retrieve 4BK0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BK0 from S2C, [Save to disk]
  • Re-refined 4bk0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BK0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BK0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BK0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bk0] [4bk0_A] [4bk0_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4BK0
  • Community annotation for 4BK0 at PDBWiki (http://pdbwiki.org)

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