4BLU Transferase date May 04, 2013
title Crystal Structure Of Escherichia Coli 23s Rrna (A2030-N6)- Methyltransferase Rlmj
authors A.S.Punekar, J.Liljeruhm, T.R.Shepherd, A.C.Forster, M.Selmer
compound source
Molecule: Ribosomal Rna Large Subunit Methyltransferase J
Chain: A, B
Ec: 2.1.1.266
Engineered: Yes
Other_details: Specifically Monomethylates The Adenine In P 2030 Of 23s Rrna
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pexp5-Cttopo
symmetry Space Group: P 1 21 1
R_factor 0.1663 R_Free 0.2064
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.870 77.750 82.500 90.00 104.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand EDO, GOL, PEG, SO4, TRS enzyme Transferase E.C.2.1.1.266 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural and functional insights into the molecular mechanism of rRNA m6A methyltransferase RlmJ., Punekar AS, Liljeruhm J, Shepherd TR, Forster AC, Selmer M, Nucleic Acids Res. 2013 Aug 13. PMID:23945937
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (4blu.pdb1.gz) 55 Kb
  • Biological Unit Coordinates (4blu.pdb2.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 4BLU
  • CSU: Contacts of Structural Units for 4BLU
  • Structure Factors (368 Kb)
  • Retrieve 4BLU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BLU from S2C, [Save to disk]
  • Re-refined 4blu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BLU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BLU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BLU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4blu_B] [4blu_A] [4blu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4BLU
  • Community annotation for 4BLU at PDBWiki (http://pdbwiki.org)

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