4BLW	Transferase	date	May 04, 2013
title	Crystal Structure Of Escherichia Coli 23s Rrna (A2030-N6)- Methyltransferase Rlmj In Complex With S-Adenosylhomocystei (Adohcy) And Adenosine Monophosphate (Amp)
authors	A.S.Punekar, J.Liljeruhm, T.R.Shepherd, A.C.Forster, M.Selmer
compound		source
Molecule: Ribosomal Rna Large Subunit Methyltransferase J Chain: A, B Ec: 2.1.1.266 Engineered: Yes Other_details: Specifically Monomethylates The Adenine In P 2030 Of 23s Rrna		Organism_scientific: Escherichia Coli Organism_taxid: 83333 Strain: K-12 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pexp5-Cttopo
symmetry	Space Group: P 1 21 1	R_factor 0.167 R_Free 0.199
crystal cell	length a length b length c angle alpha angle beta angle gamma 46.590 77.060 84.370 90.00 99.50 90.00
method	X-Ray Diffraction	resolution	1.95 Å
ligand	AMP, EDO, GOL, NA, SAH, SO4	enzyme	Transferase E.C.2.1.1.266 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural and functional insights into the molecular mechanism of rRNA m6A methyltransferase RlmJ., Punekar AS, Liljeruhm J, Shepherd TR, Forster AC, Selmer M, Nucleic Acids Res. 2013 Aug 13. PMID:23945937

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk] Biological Unit Coordinates (4blw.pdb1.gz) 53 Kb Biological Unit Coordinates (4blw.pdb2.gz) 52 Kb LPC: Ligand-Protein Contacts for 4BLW CSU: Contacts of Structural Units for 4BLW Structure Factors (311 Kb) Retrieve 4BLW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4BLW from S2C, [Save to disk] Re-refined 4blw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4BLW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4BLW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4BLW, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4blw] [4blw_A] [4blw_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4BLW

Community annotation for 4BLW at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---