4BMB Sugar Binding Protein date May 07, 2013
title Crystal Structure Of The N Terminal Domain Of Human Galectin
authors E.Buzamet, F.M.Ruiz, M.Menendez, A.Romero, H.J.Gabius, D.Solis
compound source
Molecule: Galectin-8
Chain: A
Fragment: N Terminal Domain, Residues 4-153
Synonym: Gal-8, Po66 Carbohydrate-Binding Protein, Po66-Cbp Carcinoma Tumor Antigen 1, Pcta-1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.159 R_Free 0.177
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.516 49.516 160.476 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.35 Å
ligand BGC, GAL, GOL, NA, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNatural single amino acid polymorphism (F19Y) in human galectin-8: detection of structural alterations and increased growth-regulatory activity on tumor cells., Ruiz FM, Scholz BA, Buzamet E, Kopitz J, Andre S, Menendez M, Romero A, Solis D, Gabius HJ, FEBS J. 2014 Mar;281(5):1446-64. doi: 10.1111/febs.12716. Epub 2014 Feb 3. PMID:24418318
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (4bmb.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 4BMB
  • CSU: Contacts of Structural Units for 4BMB
  • Structure Factors (1523 Kb)
  • Retrieve 4BMB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BMB from S2C, [Save to disk]
  • Re-refined 4bmb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4BMB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4BMB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BMB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bmb] [4bmb_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4BMB: [GLECT] [Gal-bind_lectin ] by SMART
    • Other resources with information on 4BMB
  • Community annotation for 4BMB at PDBWiki (http://pdbwiki.org)

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