4C1X Carbohydrate binding domain from Streptococcus pneumoniae NanA sialidase complexed with 6'-sialyllactose date
authors Yang, L., Connaris, H., Potter, J.A., Taylor, G.L.
compound source
symmetry
R_factor
R_Free 0.19540
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.84
ligand BGC, GAL, SIA, TRS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural characterization of the carbohydrate-binding module of NanA sialidase, a pneumococcal virulence factor., Yang L, Connaris H, Potter JA, Taylor GL, BMC Struct Biol. 2015 Aug 20;15:15. doi: 10.1186/s12900-015-0042-4. PMID:26289431
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (4c1x.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 4C1X
  • CSU: Contacts of Structural Units for 4C1X
  • Structure Factors (252 Kb)
  • Retrieve 4C1X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4C1X from S2C, [Save to disk]
  • Re-refined 4c1x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4C1X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4C1X
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4C1X, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4c1x] [4c1x_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4C1X: [LamG ] by SMART
    • Other resources with information on 4C1X
  • Community annotation for 4C1X at PDBWiki (http://pdbwiki.org)

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