4CFF Structure of full length human AMPK in complex with a small molecule activator, a thienopyridone derivative (A-769662) date
authors Xiao, B., Sanders, M.J., Carmena, D., Bright, N.J., Haire, L.F., Underwood, E., Patel, B.R., Heath, R.B., Walker, P.A., Hallen, S., Giordanetto, F., Martin, S.R., Carling, D., Gamblin, S.J.
compound source
symmetry
R_factor
R_Free 0.2637
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.92
ligand AMP, C1V, SEP, STU, TPO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C
  • histone serine kinase activi...


    • D, B


    F, E
  • cAMP-dependent protein kinas...


    • Primary referenceStructural basis of AMPK regulation by small molecule activators., Xiao B, Sanders MJ, Carmena D, Bright NJ, Haire LF, Underwood E, Patel BR, Heath RB, Walker PA, Hallen S, Giordanetto F, Martin SR, Carling D, Gamblin SJ, Nat Commun. 2013 Dec 19;4:3017. doi: 10.1038/ncomms4017. PMID:24352254
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (630 Kb) [Save to disk]
  • Biological Unit Coordinates (4cff.pdb1.gz) 310 Kb
  • Biological Unit Coordinates (4cff.pdb2.gz) 311 Kb
  • LPC: Ligand-Protein Contacts for 4CFF
  • CSU: Contacts of Structural Units for 4CFF
  • Structure Factors (404 Kb)
  • Retrieve 4CFF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CFF from S2C, [Save to disk]
  • Re-refined 4cff structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4CFF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4CFF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4CFF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cff_E] [4cff_A] [4cff_B] [4cff] [4cff_D] [4cff_F] [4cff_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4CFF: [AMPKBI] [CBS] [S_TKc ] by SMART
    • Other resources with information on 4CFF
  • Community annotation for 4CFF at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science