4D2E Crystal structure of an integral membrane kinase - v2.3 date
authors Li, D., Boland, C., Caffrey, M.
compound source
symmetry
R_factor
R_Free 0.2288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.28
ligand 78M, 78N, FLC, NA, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceCell-free expression and in meso crystallisation of an integral membrane kinase for structure determination., Boland C, Li D, Shah ST, Haberstock S, Dotsch V, Bernhard F, Caffrey M, Cell Mol Life Sci. 2014 Jul 11. PMID:25012698
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (220 Kb) [Save to disk]
  • Biological Unit Coordinates (4d2e.pdb1.gz) 110 Kb
  • Biological Unit Coordinates (4d2e.pdb2.gz) 100 Kb
  • LPC: Ligand-Protein Contacts for 4D2E
  • CSU: Contacts of Structural Units for 4D2E
  • Structure Factors (1548 Kb)
  • Retrieve 4D2E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4D2E from S2C, [Save to disk]
  • Re-refined 4d2e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4D2E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4D2E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4D2E, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4d2e] [4d2e_D] [4d2e_C] [4d2e_E] [4d2e_B] [4d2e_A] [4d2e_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4D2E
  • Community annotation for 4D2E at PDBWiki (http://pdbwiki.org)

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