4D5B	Crystal structure of CymA from Klebsiella oxytoca	date
authors	Berg, B.van.den., Bhamidimarri, S.P., Kleinekathoefer, U., Winterhalter, M.
compound		source
symmetry		R_factor R_Free 0.1898
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.70
ligand	C8E, GLC	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Outer-membrane translocation of bulky small molecules by passive diffusion., van den Berg B, Prathyusha Bhamidimarri S, Dahyabhai Prajapati J, Kleinekathofer U, Winterhalter M, Proc Natl Acad Sci U S A. 2015 May 26. pii: 201424835. PMID:26015567

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (249 Kb) [Save to disk] Biological Unit Coordinates (4d5b.pdb1.gz) 121 Kb Biological Unit Coordinates (4d5b.pdb2.gz) 119 Kb LPC: Ligand-Protein Contacts for 4D5B CSU: Contacts of Structural Units for 4D5B Structure Factors (1494 Kb) Retrieve 4D5B in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4D5B from S2C, [Save to disk] Re-refined 4d5b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4D5B in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4D5B

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4D5B, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4d5b] [4d5b_B] [4d5b_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4D5B

Community annotation for 4D5B at PDBWiki (http://pdbwiki.org)

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