4DEA Aurora A in complex with YL1-038-18 date 2012-01-20
authors Martin, M.P., Zhu, J.Y., Schonbrunn, E.
compound source
symmetry
R_factor
R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.45
ligand EDO, NHI BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDevelopment of ortho-Chlorophenyl Substituted Pyrimidines as Exceptionally Potent Aurora A Inhibitors., Lawrence H, Martin MP, Luo Y, Pireddu R, Yang H, Gevariya H, Ozcan S, Zhu JY, Kendig R, Rodriguez M, Elias R, Cheng J, Sebti SM, Schonbrunn E, Lawrence NJ, J Med Chem. 2012 Jul 17. PMID:22803810
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (4dea.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 4DEA
  • CSU: Contacts of Structural Units for 4DEA
  • Structure Factors (113 Kb)
  • Retrieve 4DEA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DEA from S2C, [Save to disk]
  • Re-refined 4dea structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DEA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4DEA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DEA, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dea_A] [4dea]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4DEA: [S_TKc ] by SMART
    • Other resources with information on 4DEA
  • Community annotation for 4DEA at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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