4DLI Human p38 MAP kinase in complex with RL87 date 2012-02-06
authors Gruetter, C., Getlik, M., Simard, J.R., Rauh, D.
compound source
symmetry
R_factor
R_Free 0.2546
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.91
ligand IRG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFluorophore labeled kinase detects ligands that bind within the MAPK insert of p38alpha kinase., Getlik M, Simard JR, Termathe M, Grutter C, Rabiller M, van Otterlo WA, Rauh D, PLoS One. 2012;7(7):e39713. Epub 2012 Jul 2. PMID:22768308
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (4dli.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 4DLI
  • CSU: Contacts of Structural Units for 4DLI
  • Structure Factors (220 Kb)
  • Retrieve 4DLI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DLI from S2C, [Save to disk]
  • Re-refined 4dli structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DLI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DLI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DLI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dli_A] [4dli]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4DLI: [S_TKc ] by SMART
  • Other resources with information on 4DLI
  • Community annotation for 4DLI at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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