4DT9 Crystal Structure of Aminoglycoside-2''-Phosphotransferase Type IVa in Complex with Guanosine date 2012-02-20
authors Shi, K., Berghuis, A.M.
compound source
symmetry
R_factor
R_Free 0.24204
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand GMP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Basis for Dual Nucleotide Selectivity of Aminoglycoside 2''-Phosphotransferase IVa Provides Insight on Determinants of Nucleotide Specificity of Aminoglycoside Kinases., Shi K, Berghuis AM, J Biol Chem. 2012 Apr 13;287(16):13094-102. Epub 2012 Feb 24. PMID:22371504
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (204 Kb) [Save to disk]
  • Biological Unit Coordinates (4dt9.pdb1.gz) 98 Kb
  • Biological Unit Coordinates (4dt9.pdb2.gz) 100 Kb
  • Biological Unit Coordinates (4dt9.pdb3.gz) 196 Kb
  • LPC: Ligand-Protein Contacts for 4DT9
  • CSU: Contacts of Structural Units for 4DT9
  • Structure Factors (501 Kb)
  • Retrieve 4DT9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DT9 from S2C, [Save to disk]
  • Re-refined 4dt9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DT9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DT9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DT9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dt9] [4dt9_B] [4dt9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4DT9
  • Community annotation for 4DT9 at PDBWiki (http://pdbwiki.org)
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