4E1O Human histidine decarboxylase complex with Histidine methyl ester (HME) date 2012-03-06
authors Komori, H., Nitta, Y., Ueno, H., Higuchi, Y.
compound source
symmetry
R_factor
R_Free 0.18100
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand CSX, PLP, PVH enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceStructural study reveals Ser345 determines substrate specificity on human histidine decarboxylase., Komori H, Nitta Y, Ueno H, Higuchi Y, J Biol Chem. 2012 Jul 5. PMID:22767596
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (946 Kb) [Save to disk]
  • Biological Unit Coordinates (4e1o.pdb1.gz) 314 Kb
  • Biological Unit Coordinates (4e1o.pdb2.gz) 320 Kb
  • Biological Unit Coordinates (4e1o.pdb3.gz) 317 Kb
  • LPC: Ligand-Protein Contacts for 4E1O
  • CSU: Contacts of Structural Units for 4E1O
  • Structure Factors (2670 Kb)
  • Retrieve 4E1O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4E1O from S2C, [Save to disk]
  • Re-refined 4e1o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4E1O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4E1O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4E1O, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4e1o_C] [4e1o_A] [4e1o_D] [4e1o_E] [4e1o_F] [4e1o_B] [4e1o]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4E1O
  • Community annotation for 4E1O at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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