4E52 Crystal structure of Haemophilus Eagan 4A polysaccharide bound human lung surfactant protein D date 2012-03-13
authors Shrive, A.K., Greenhough, T.J.
compound source
symmetry
R_factor
R_Free 0.2100
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand CA, GMH, KD5 enzyme
Primary referenceHigh-resolution structural insights into ligand binding and immune cell recognition by human lung surfactant protein D., Shrive AK, Tharia HA, Strong P, Kishore U, Burns I, Rizkallah PJ, Reid KB, Greenhough TJ, J Mol Biol. 2003 Aug 8;331(2):509-23. PMID:12888356
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (4e52.pdb1.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 4E52
  • CSU: Contacts of Structural Units for 4E52
  • Structure Factors (561 Kb)
  • Retrieve 4E52 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4E52 from S2C, [Save to disk]
  • Re-refined 4e52 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4E52 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4E52
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4E52, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4e52_A] [4e52] [4e52_B] [4e52_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4E52: [CLECT ] by SMART
    • Other resources with information on 4E52
  • Community annotation for 4E52 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science