4E96 Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor PFi-1 date 2012-03-20
authors Filippakopoulos, P., Picaud, S., Felletar, I., Fedorov, O., Delft, F.von., Arrowsmith, C.H., Edwards, A.M., Weigelt, J., Fish, P., Bunnage, M., Owen, D., Knapp, S., Cook, A., SGC, Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.2855
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.92
ligand 0NS, DMS, EDO, NA BindingDB enzyme
Primary referenceIdentification of a Chemical Probe for Bromo and Extra C-Terminal Bromodomain Inhibition through Optimization of a Fragment-Derived Hit., Fish PV, Filippakopoulos P, Bish G, Brennan PE, Bunnage ME, Cook AS, Federov O, Gerstenberger BS, Jones H, Knapp S, Marsden B, Nocka K, Owen DR, Philpott M, Picaud S, Primiano MJ, Ralph MJ, Sciammetta N, Trzupek JD, J Med Chem. 2012 Nov 8. PMID:23095041
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (4e96.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 4E96
  • CSU: Contacts of Structural Units for 4E96
  • Structure Factors (146 Kb)
  • Retrieve 4E96 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4E96 from S2C, [Save to disk]
  • Re-refined 4e96 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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    • Visual 3D analysis of 4E96
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4E96, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4e96_A] [4e96]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4E96: [BROMO ] by SMART
    • Other resources with information on 4E96
  • Community annotation for 4E96 at PDBWiki (http://pdbwiki.org)
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