4EC9 Crystal structure of full-length cdk9 in complex with cyclin t date 2012-03-26
authors Baumli, S., Hole, A.J., Endicott, J.A.
compound source
symmetry
R_factor
R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.21
ligand TPO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceThe CDK9 tail determines the reaction pathway of positive transcription elongation factor b., Baumli S, Hole AJ, Wang LZ, Noble ME, Endicott JA, Structure. 2012 Oct 10;20(10):1788-95. doi: 10.1016/j.str.2012.08.011. Epub 2012 , Sep 6. PMID:22959624
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (4ec9.pdb1.gz) 93 Kb
  • LPC: Ligand-Protein Contacts for 4EC9
  • CSU: Contacts of Structural Units for 4EC9
  • Structure Factors (255 Kb)
  • Retrieve 4EC9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EC9 from S2C, [Save to disk]
  • Re-refined 4ec9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4EC9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4EC9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4EC9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ec9] [4ec9_A] [4ec9_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4EC9: [CYCLIN] [S_TKc ] by SMART
  • Other resources with information on 4EC9
  • Community annotation for 4EC9 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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