4EER Crystal structure of LOV2 domain of Arabidopsis thaliana phototropin 2 C426A mutant date
authors Hitomi, K., Christie, J.M., Arvai, A.S., Hartfield, K.A., Pratt, A.J., Tainer, J.A., Getzoff, E.D.
compound source
symmetry
R_factor
R_Free 0.27541
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.75
ligand FMN enzyme
note 4EER (Molecule of the Month:pdb183)
Primary referenceStructural Tuning of the Fluorescent Protein iLOV for Improved Photostability., Christie JM, Hitomi K, Arvai AS, Hartfield KA, Mettlen M, Pratt AJ, Tainer JA, Getzoff ED, J Biol Chem. 2012 May 9. PMID:22573334
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (4eer.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 4EER
  • CSU: Contacts of Structural Units for 4EER
  • Structure Factors (140 Kb)
  • Retrieve 4EER in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EER from S2C, [Save to disk]
  • Re-refined 4eer structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4EER in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4EER
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4EER, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4eer] [4eer_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4EER: [PAC ] by SMART
    • Other resources with information on 4EER
  • Community annotation for 4EER at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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