4EG8 Trypanosoma brucei methionyl-tRNA synthetase in complex with compound Chem 89 date
authors Koh, C.Y., Kim, J.E., Shibata, S., Fan, E., Verlinde, C.L.M.J., Hol, W.G.J.
compound source
symmetry
R_factor
R_Free 0.22369
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
ligand 0P6, CAS, DMS, GOL, MET enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDistinct States of Methionyl-tRNA Synthetase Indicate Inhibitor Binding by Conformational Selection., Koh CY, Kim JE, Shibata S, Ranade RM, Yu M, Liu J, Gillespie JR, Buckner FS, Verlinde CL, Fan E, Hol WG, Structure. 2012 Aug 14. PMID:22902861
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (366 Kb) [Save to disk]
  • Biological Unit Coordinates (4eg8.pdb1.gz) 181 Kb
  • Biological Unit Coordinates (4eg8.pdb2.gz) 181 Kb
  • LPC: Ligand-Protein Contacts for 4EG8
  • CSU: Contacts of Structural Units for 4EG8
  • Structure Factors (1282 Kb)
  • Retrieve 4EG8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EG8 from S2C, [Save to disk]
  • Re-refined 4eg8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4EG8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4EG8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4EG8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4eg8_A] [4eg8_B] [4eg8]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4EG8
  • Community annotation for 4EG8 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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