4F00 Crystal structure of the substrate binding domain of E.coli DnaK in complex with an apidaecin fragment from the bumblebee (residues 3 to 11) date
authors Zahn, M., Straeter, N.
compound source
symmetry
R_factor
R_Free 0.24220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
Primary referenceStructural Studies on the Forward and Reverse Binding Modes of Peptides to the Chaperone DnaK., Zahn M, Berthold N, Kieslich B, Knappe D, Hoffmann R, Strater N, J Mol Biol. 2013 Apr 2. pii: S0022-2836(13)00208-8. doi:, 10.1016/j.jmb.2013.03.041. PMID:23562829
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (4f00.pdb1.gz) 277 Kb
  • Biological Unit Coordinates (4f00.pdb2.gz) 139 Kb
  • Biological Unit Coordinates (4f00.pdb3.gz) 139 Kb
  • Biological Unit Coordinates (4f00.pdb4.gz) 70 Kb
  • CSU: Contacts of Structural Units for 4F00
  • Structure Factors (583 Kb)
  • Retrieve 4F00 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F00 from S2C, [Save to disk]
  • Re-refined 4f00 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4F00 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4F00
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4F00, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f00_A] [4f00_B] [4f00]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4F00
  • Community annotation for 4F00 at PDBWiki (http://pdbwiki.org)

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