4F25 Crystal structure of the second RRM domain of human PABPC1 at pH 6.0 date 2012-05-07
authors Kozlov, G., Safaee, N., Gehring, K.
compound source
symmetry
R_factor
R_Free 0.26919
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInterdomain Allostery Promotes Assembly of the Poly(A) mRNA Complex with PABP and eIF4G., Safaee N, Kozlov G, Noronha AM, Xie J, Wilds CJ, Gehring K, Mol Cell. 2012 Nov 9;48(3):375-86. doi: 10.1016/j.molcel.2012.09.001. Epub 2012, Oct 4. PMID:23041282
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (4f25.pdb1.gz) 28 Kb
  • CSU: Contacts of Structural Units for 4F25
  • Structure Factors (103 Kb)
  • Retrieve 4F25 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F25 from S2C, [Save to disk]
  • Re-refined 4f25 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4F25 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4F25
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4F25, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f25] [4f25_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4F25: [RRM ] by SMART
  • Other resources with information on 4F25
  • Community annotation for 4F25 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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