4F9M Crystal structure of the PPARgamma-LBD complexed with a cercosporamide derivative modulator date 2012-05-19
authors Matsui, Y., Hanzawa, H.
compound source
symmetry
R_factor
R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand FCM BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSynthesis and biological evaluation of novel (-)-cercosporamide derivatives as potent selective PPARgamma modulators., Furukawa A, Arita T, Fukuzaki T, Mori M, Honda T, Satoh S, Matsui Y, Wakabayashi K, Hayashi S, Nakamura K, Araki K, Kuroha M, Tanaka J, Wakimoto S, Suzuki O, Ohsumi J, Eur J Med Chem. 2012 Aug;54:522-33. Epub 2012 Jun 7. PMID:22727448
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (4f9m.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 4F9M
  • CSU: Contacts of Structural Units for 4F9M
  • Structure Factors (178 Kb)
  • Retrieve 4F9M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F9M from S2C, [Save to disk]
  • Re-refined 4f9m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4F9M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4F9M
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4F9M, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f9m_C] [4f9m] [4f9m_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4F9M: [HOLI ] by SMART
    • Other resources with information on 4F9M
  • Community annotation for 4F9M at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science